MCP ServerSTDIOOfficialv1.3.0

galaxy-mcp MCP Server

MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows

io.github.galaxyproject/galaxy-mcp

Hosted URL

https://github.com/galaxyproject/galaxy-mcp

Transport

STDIO

Auth

2 required env vars

Connect to galaxy-mcp

Hosted endpoint — paste into any MCP client.

https://github.com/galaxyproject/galaxy-mcp

Configuration this server reads at startup.

GALAXY_URLRequired
URL of the Galaxy instance to connect to (e.g., https://usegalaxy.org)
GALAXY_API_KEYRequiredSecret
API key for authenticating with the Galaxy instance

Where to find authoritative docs and source for galaxy-mcp.

Open MCP Agent Studio and connect this server to Claude, GPT, Gemini, DeepSeek and more — no install required.

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