MCP ServerSTDIOOfficialv1.1.11

tooluniverse MCP Server

1000+ scientific tools for AI scientists: life science, reserach, literature, and more.

io.github.mims-harvard/tooluniverse

Hosted URL

https://aiscientist.tools

Transport

STDIO

Auth

No auth required

Connect to tooluniverse

Hosted endpoint — paste into any MCP client.

https://aiscientist.tools

Environment variables

Configuration this server reads at startup.

  • OPENAI_API_KEYSecret

    OpenAI API key for LLM-based tool finding and embedding features

  • ANTHROPIC_API_KEYSecret

    Anthropic API key for Claude-based features

  • GEMINI_API_KEYSecret

    Google Gemini API key for Gemini-based features

  • OPENROUTER_API_KEYSecret

    OpenRouter API key for accessing 100+ LLM models

  • AZURE_OPENAI_API_KEYSecret

    Azure OpenAI API key (alternative to OpenAI)

  • HF_TOKENSecret

    HuggingFace token for accessing models and datasets

  • NCBI_API_KEYSecret

    NCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/

  • SEMANTIC_SCHOLAR_API_KEYSecret

    Semantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api

  • BIOGRID_API_KEYSecret

    BioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/

  • DISGENET_API_KEYSecret

    DisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/

  • OMIM_API_KEYSecret

    OMIM API key for Mendelian disease data. Register at https://omim.org/api

  • ONCOKB_API_TOKENSecret

    OncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess

  • NVIDIA_API_KEYSecret

    NVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com

  • USPTO_API_KEYSecret

    USPTO API key for patent data access. Register at https://developer.uspto.gov/

  • UMLS_API_KEYSecret

    UMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/

  • BRENDA_EMAIL

    BRENDA enzyme database login email. Register at https://www.brenda-enzymes.org/

  • BRENDA_PASSWORDSecret

    BRENDA enzyme database login password

Resources

Where to find authoritative docs and source for tooluniverse.

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