Search and map OMOP medical vocabularies—diagnoses, drugs, procedures, measurements—to standardize clinical data across healthcare systems. For developers building data pipelines, research platforms, or EHR integrations that need standardized medical coding.
io.github.OMOPHub/omophub-mcp
Local install
STDIO
1 required env var
How models use it and what it is built for.
Search and map OMOP medical vocabularies—diagnoses, drugs, procedures, measurements—to standardize clinical data across healthcare systems. For developers building data pipelines, research platforms, or EHR integrations that need standardized medical coding.
Local install — runs as a subprocess.
Configuration this server reads at startup.
Your OMOPHub API key. Get one at https://omophub.com/dashboard/api-keys
Where to find authoritative docs and source for Omophub.
Paste any of these into Agent Studio after connecting Omophub.
Common questions about connecting and running Omophub.
What medical vocabularies does OMOPHub MCP support?
OMOPHub provides access to OMOP (Observational Medical Outcomes Partnership) standardized vocabularies including ICD-10, SNOMED CT, RxNorm, CPT, and LOINC. You can search, lookup, and map between these coding systems to standardize clinical data.
How do I set up authentication for this MCP server?
You need an OMOPHUB_API_KEY, which you can generate at https://omophub.com/dashboard/api-keys. Set this as an environment variable before running the server via npx @omophub/omophub-mcp@1.1.0.
Can I map between different medical coding systems?
Yes, the server supports mapping and navigation between OMOP vocabularies. You can translate codes from one standard (like ICD-10) to another (like SNOMED CT) using the OMOP concept relationships.
What is OMOP and why should I use it for healthcare data?
OMOP is a common data model and standardized vocabulary set used across healthcare research and EHR systems. Using OMOP ensures your clinical data is interoperable, comparable, and ready for analytics across different healthcare organizations.
Do I need a paid OMOPHub account to use this MCP server?
You need an OMOPHub account to generate an API key at https://omophub.com/dashboard/api-keys. Check OMOPHub's pricing page for details on free vs. paid tiers and API rate limits.
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